SCRIPT LINE
APIs discovered by reading code, migrations held together by hope.
Contracts written first, migrations rehearsed before they run.
34 skills on this line
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
Expert on Anthropic Claude API, models, prompt engineering, function calling, vision, and best practices. Triggers on anthropic, claude, api, prompt, function calling, vision, messages api, embeddings
Guides stable API and interface design. Use when designing APIs, module boundaries, or any public interface. Use when creating REST or GraphQL endpoints, defining type contracts between modules, or establishing boundaries between frontend and backend.
Apify JS SDK Documentation - Web scraping, crawling, and Actor development
Backend architecture patterns, API design, database optimization, and server-side best practices for Node.js, Express, and Next.js API routes. Use when building or reviewing Node.js, Express, or Next.js API routes and their data access.
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
CREATE/REPLAN Stories for Epic (5-10 Stories). Delegates ln-221-standards-researcher for standards research. Decompose-First Pattern. Auto-discovers team/Epic.
Research standards/patterns via MCP Ref. Generates Standards Research for Story Technical Notes subsection. Reusable worker.
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
Design comprehensive test cases using PICT (Pairwise Independent Combinatorial Testing) for any piece of requirements or code. Analyzes inputs, generates PICT models with parameters, values, and constraints for valid scenarios using pairwise testing. Outputs the PICT model, markdown table of test cases, and expected results.
Comprehensive project planning and documentation generator for software projects. Creates structured requirements documents, system design documents, and task breakdown plans with implementation tracking. Use when starting a new project, defining specifications, creating technical designs, or breaking down complex systems into implementable tasks. Supports user story format, acceptance criteria, component design, API specifications, and hierarchical task decomposition with requirement traceability.